OmicsLogic Inc

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OmicsLogic Inc Deciphering Omics Data with Precision and Pioneering Data Science to Unveil the Language of Life.

We facilitate your entire research journey, providing custom-built tools and software solutions tailored to meet your specific research needs. Pine Biotech was established to bring computational big-data analysis tools to the Agrotech and Biotech industries to address industry-specific challenges.

What exactly is inside each file your pipeline produces? And do you know which one the next tool actually needs? Our new...
10/12/2026

What exactly is inside each file your pipeline produces? And do you know which one the next tool actually needs?

Our new blog is a practical guide to ๐‚๐ก๐ˆ๐-๐’๐ž๐ช ๐Ÿ๐ข๐ฅ๐ž ๐Ÿ๐จ๐ซ๐ฆ๐š๐ญ๐ฌ, following the data from raw reads to peaks. It covers FASTQ, SAM/BAM, BED, ๐ง๐š๐ซ๐ซ๐จ๐ฐ๐๐ž๐š๐ค ๐š๐ง๐ ๐›๐ซ๐จ๐š๐๐๐ž๐š๐ค, ๐›๐ž๐๐†๐ซ๐š๐ฉ๐ก ๐š๐ง๐ ๐›๐ข๐ ๐–๐ข๐ , FASTA, GTF/GFF, and TSV/CSV, explaining what each file stores, which tools read it, and where it fits in the workflow. It also flags common mistakes, like mixing up ๐๐€๐Œ ๐š๐ง๐ ๐๐„๐ƒ or treating a signal track as a peak call.

Want to put these formats to work on real ๐‡๐ฎ๐ง๐ญ๐ข๐ง๐ ๐ญ๐จ๐ง'๐ฌ ๐๐ข๐ฌ๐ž๐š๐ฌ๐ž data? Details on our upcoming Epigenomics workshop are inside.

๐‘๐ž๐š๐ ๐ญ๐ก๐ž ๐Ÿ๐ฎ๐ฅ๐ฅ ๐›๐ฅ๐จ๐  ๐ก๐ž๐ซ๐ž:
https://omicslogic.com/blogs/from-reads-to-peaks-understanding-chip-seq-file-formats

Which file format tripped you up the most when you started working with NGS data?

๐Ÿš€ ๐Ž๐ฆ๐ข๐œ๐ฌ๐‹๐จ๐ ๐ข๐œ ๐๐†๐’ ๐†๐ž๐ง๐จ๐ฆ๐ข๐œ๐ฌ ๐ƒ๐š๐ญ๐š ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ ๐๐ซ๐จ๐ ๐ซ๐š๐ฆ ๐Ÿงฌ โ€“ a step-by-step journey through assembly, variant discovery, annotati...
10/11/2026

๐Ÿš€ ๐Ž๐ฆ๐ข๐œ๐ฌ๐‹๐จ๐ ๐ข๐œ ๐๐†๐’ ๐†๐ž๐ง๐จ๐ฆ๐ข๐œ๐ฌ ๐ƒ๐š๐ญ๐š ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ ๐๐ซ๐จ๐ ๐ซ๐š๐ฆ ๐Ÿงฌ โ€“ a step-by-step journey through assembly, variant discovery, annotation, and interpretation in genomics. Designed for undergraduates, postgraduates, faculty, and researchers looking to build practical skills in next-generation sequencing data analysis.

๐Ÿ“š ๐‚๐ฎ๐ซ๐ซ๐ข๐œ๐ฎ๐ฅ๐ฎ๐ฆ ๐Ž๐ฏ๐ž๐ซ๐ฏ๐ข๐ž๐ฐ

๐Ÿ”น ๐˜ฝ๐™€๐™‚๐™„๐™‰๐™‰๐™€๐™ ๐™‡๐™€๐™‘๐™€๐™‡ โ€“ Build a strong foundation in DNA structure and genetic variants (SNPs, insertions, deletions), understand genomics workflows from biological samples to sequencing, and explore NGS formats (FASTQ, BAM, VCF). Learn quality control, troubleshooting, and apply key databases with alignment, visualization, and phylogenetic analysis using NCBI Virus.

๐Ÿ”น ๐™„๐™‰๐™๐™€๐™๐™ˆ๐™€๐˜ฟ๐™„๐˜ผ๐™๐™€ ๐™‡๐™€๐™‘๐™€๐™‡ โ€“ Gain experience in variant discovery, phylogenetics, expression profiling, and functional annotation. Work with public repositories (NCBI, ENA, EBI) and major resources (SRA Run Table, TCGA, gnomAD, ClinVar, WormBase, FlyBase). Practice retrieving and managing genomic datasets, and perform de novo assembly workflows with real sequencing data.

๐Ÿ”น ๐˜ผ๐˜ฟ๐™‘๐˜ผ๐™‰๐˜พ๐™€๐˜ฟ ๐™‡๐™€๐™‘๐™€๐™‡ โ€“ Master advanced workflows including FastQC, trimming, assembly with SPAdes/MEGAHIT, and annotation with Prokka. Perform reference-based assembly (FASTQ download, QC, trimming with fastp, alignment with BWA-MEM), and learn the complete GATK 4.6 workflow (MarkDuplicates, BaseRecalibrator, HaplotypeCaller, VEP). Explore variant interpretation with ACMG classification, genome browsers, and variant annotation using ANNOVAR.

โœจ By the end of this program, youโ€™ll be able to apply end-to-end genomics pipelines to research questions and clinical datasets with confidence.

Learn more: https://forms.gle/Bz6HndM8pXyZvBvs9

๐Ÿ’-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐๐š๐ง-๐†๐ž๐ง๐จ๐ฆ๐ž ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ (๐๐š๐œ๐ญ๐ž๐ซ๐ข๐š๐ฅ ๐–๐ก๐จ๐ฅ๐ž ๐†๐ž๐ง๐จ๐ฆ๐ž ๐’๐ž๐ช๐ฎ๐ž๐ง๐œ๐ข๐ง๐ , ๐€๐ง๐ญ๐ข๐ฆ๐ข๐œ๐ซ๐จ๐›๐ข๐š๐ฅ ๐‘๐ž๐ฌ๐ข๐ฌ๐ญ๐š๐ง๐œ๐ž, ๐‚๐ฅ๐ข๐ง๐ข๐œ...
10/11/2026

๐Ÿ’-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐๐š๐ง-๐†๐ž๐ง๐จ๐ฆ๐ž ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ (๐๐š๐œ๐ญ๐ž๐ซ๐ข๐š๐ฅ ๐–๐ก๐จ๐ฅ๐ž ๐†๐ž๐ง๐จ๐ฆ๐ž ๐’๐ž๐ช๐ฎ๐ž๐ง๐œ๐ข๐ง๐ , ๐€๐ง๐ญ๐ข๐ฆ๐ข๐œ๐ซ๐จ๐›๐ข๐š๐ฅ ๐‘๐ž๐ฌ๐ข๐ฌ๐ญ๐š๐ง๐œ๐ž, ๐‚๐ฅ๐ข๐ง๐ข๐œ๐š๐ฅ ๐ƒ๐ข๐š๐ ๐ง๐จ๐ฌ๐ญ๐ข๐œ๐ฌ) ๐Ÿงฌ๐Ÿ’ป

This four day online workshop will integrate theory and hands-on bioinformatics practice, guiding participants through the complete workflow from Bacterial Whole Genome Sequencing (WGS) to pan-genome construction and interpretation. ๐Ÿ’ก The sessions will emphasize real-world applications in clinical diagnostics, antimicrobial resistance, and biotechnology industries.

๐‘ฉ๐’š ๐’•๐’‰๐’† ๐’†๐’๐’… ๐’๐’‡ ๐’•๐’‰๐’† ๐’˜๐’๐’“๐’Œ๐’”๐’‰๐’๐’‘, ๐’‘๐’‚๐’“๐’•๐’Š๐’„๐’Š๐’‘๐’‚๐’๐’•๐’” ๐’˜๐’Š๐’๐’ ๐’ƒ๐’† ๐’‚๐’ƒ๐’๐’† ๐’•๐’:
- Understand how NGS data contributes to pan-genome studies.
- Perform basic genome assembly, annotation, clustering, and pan-genome construction
- Interpret gene presence/absence matrices and phylogenetic outputs.
- Apply concepts to case studies in clinical, research, and industrial contexts.

๐Ÿ“… ๐ƒ๐š๐ญ๐ž: December 7, 2026 - December 10, 2026
๐Ÿ•’ ๐“๐ข๐ฆ๐ž: 8:00 PM IST | 8:30 AM CST
๐Ÿ“ ๐‹๐จ๐œ๐š๐ญ๐ข๐จ๐ง: Online

๐Ÿ”— For more information on workshop structure, curriculum, and training resources, register here: https://forms.gle/JcJBNpX4rPVau8BZ9

๐Ÿ“ˆ ๐…๐ข๐ง๐๐ข๐ง๐  ๐๐ข๐Ÿ๐Ÿ๐ž๐ซ๐ž๐ง๐ญ๐ข๐š๐ฅ๐ฅ๐ฒ ๐ž๐ฑ๐ฉ๐ซ๐ž๐ฌ๐ฌ๐ž๐ ๐ ๐ž๐ง๐ž๐ฌ ๐ข๐ฌ ๐จ๐ง๐ฅ๐ฒ ๐ญ๐ก๐ž ๐›๐ž๐ ๐ข๐ง๐ง๐ข๐ง๐ .A list of upregulated and downregulated genes tells you w...
10/11/2026

๐Ÿ“ˆ ๐…๐ข๐ง๐๐ข๐ง๐  ๐๐ข๐Ÿ๐Ÿ๐ž๐ซ๐ž๐ง๐ญ๐ข๐š๐ฅ๐ฅ๐ฒ ๐ž๐ฑ๐ฉ๐ซ๐ž๐ฌ๐ฌ๐ž๐ ๐ ๐ž๐ง๐ž๐ฌ ๐ข๐ฌ ๐จ๐ง๐ฅ๐ฒ ๐ญ๐ก๐ž ๐›๐ž๐ ๐ข๐ง๐ง๐ข๐ง๐ .

A list of upregulated and downregulated genes tells you what changed but not why those changes matter biologically.

That's where downstream analysis comes in. From functional annotation and Gene Ontology (GO) analysis to pathway enrichment, network analysis, and biological interpretation, each step helps transform a list of genes into meaningful biological insights and research conclusions.

๐Ÿ‘‰ Swipe through to explore the key stages of downstream RNA-Seq analysis and understand how researchers uncover the biological mechanisms behind their results.

๐ŸŒฟ Ready to perform these analyses yourself?

Join our ๐Ÿฐ-๐—ฑ๐—ฎ๐˜† ๐—น๐—ถ๐˜ƒ๐—ฒ ๐—ผ๐—ป๐—น๐—ถ๐—ป๐—ฒ ๐˜„๐—ผ๐—ฟ๐—ธ๐˜€๐—ต๐—ผ๐—ฝ on ๐—ฃ๐—น๐—ฎ๐—ป๐˜ ๐—ฅ๐—ก๐—”-๐—ฆ๐—ฒ๐—พ ๐——๐—ฎ๐˜๐—ฎ ๐—”๐—ป๐—ฎ๐—น๐˜†๐˜€๐—ถ๐˜€ ๐˜„๐—ถ๐˜๐—ต ๐—ฅ ๐—ฃ๐—ฟ๐—ผ๐—ด๐—ฟ๐—ฎ๐—บ๐—บ๐—ถ๐—ป๐—ด!

๐Ÿ“… ๐——๐—ฎ๐˜๐—ฒ๐˜€: November 30 - December 3, 2026
โฐ ๐—ง๐—ถ๐—บ๐—ฒ: 7:30 PM IST | 8:00 AM CST
๐Ÿ’ป ๐—™๐—ผ๐—ฟ๐—บ๐—ฎ๐˜: Live + Hands-on Online Workshop

๐Ÿ”— ๐—ฅ๐—ฒ๐—ด๐—ถ๐˜€๐˜๐—ฒ๐—ฟ ๐—ก๐—ผ๐˜„: https://forms.gle/4bSsNJhZSLhVKsWG7

๐ŸŽฏ Ideal for students, researchers, plant scientists, and professionals looking to strengthen their RNA-Seq and transcriptomics analysis skills.

๐ŸŽ‰๐ˆ๐ง๐ญ๐ซ๐จ๐๐ฎ๐œ๐ข๐ง๐  ๐Ž๐ฎ๐ซ ๐๐ž๐ฐ ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐Ÿ’-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ ๐จ๐ง ๐’๐ฉ๐š๐ญ๐ข๐š๐ฅ ๐“๐ซ๐š๐ง๐ฌ๐œ๐ซ๐ข๐ฉ๐ญ๐จ๐ฆ๐ข๐œ๐ฌ ๐ƒ๐š๐ญ๐š ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ! ๐Ÿงฌ๐ŸงซFrom raw Visiu...
10/11/2026

๐ŸŽ‰๐ˆ๐ง๐ญ๐ซ๐จ๐๐ฎ๐œ๐ข๐ง๐  ๐Ž๐ฎ๐ซ ๐๐ž๐ฐ ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐Ÿ’-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ ๐จ๐ง ๐’๐ฉ๐š๐ญ๐ข๐š๐ฅ ๐“๐ซ๐š๐ง๐ฌ๐œ๐ซ๐ข๐ฉ๐ญ๐จ๐ฆ๐ข๐œ๐ฌ ๐ƒ๐š๐ญ๐š ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ! ๐Ÿงฌ๐Ÿงซ

From raw Visium HD output to spatially resolved biological insights, this workshop takes you through a complete spatial transcriptomics analysis workflow using a real clinical breast cancer case study. ๐Ÿ”ฌ

Across four live, hands-on sessions, you'll work through quality control, data import, normalization, dimensionality reduction, clustering, cell-type annotation, differential expression, and spatial statistics using real spatial transcriptomics data.
๐Ÿ“Š
You'll learn how to work with Seurat v5, Space Ranger outputs, Loupe Browser, SingleR, CellDex references, Moran's I, nnSVG, RCTD, and ligand-receptor analysis, while also applying sketch-based workflows to analyze datasets larger than available system memory.
๐Ÿงช
โœจ By the end, you'll be able to build an annotated, spatially resolved dataset, identify tissue domains and cellular niches, generate publication-quality figures, and produce a reproducible analysis report in R Markdown/Quarto.

๐Ÿ“… ๐ƒ๐š๐ญ๐ž: November 23 - 26, 2026
๐Ÿ•’ ๐“๐ข๐ฆ๐ž: 8:00 PM IST | 8:30 AM CST
๐Ÿ’ป ๐…๐จ๐ซ๐ฆ๐š๐ญ: Live + Hands-on
๐Ÿ”— ๐‘๐ž๐ ๐ข๐ฌ๐ญ๐ž๐ซ ๐ก๐ž๐ซ๐ž: https://forms.gle/sgMbZKEUB8oJX4EK8

Seurat CancerResearch

๐Ÿ’ป๐Ÿงฌ ๐Ÿ‘-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ ๐๐ข๐จ๐ฆ๐š๐ซ๐ค๐ž๐ซ ๐ˆ๐๐ž๐ง๐ญ๐ข๐Ÿ๐ข๐œ๐š๐ญ๐ข๐จ๐ง ๐”๐ฌ๐ข๐ง๐  ๐Œ๐š๐œ๐ก๐ข๐ง๐ž ๐‹๐ž๐š๐ซ๐ง๐ข๐ง๐  ๐ฐ๐ข๐ญ๐ก ๐๐ฒ๐ญ๐ก๐จ๐ง.The sessions are designed ...
10/11/2026

๐Ÿ’ป๐Ÿงฌ ๐Ÿ‘-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ ๐๐ข๐จ๐ฆ๐š๐ซ๐ค๐ž๐ซ ๐ˆ๐๐ž๐ง๐ญ๐ข๐Ÿ๐ข๐œ๐š๐ญ๐ข๐จ๐ง ๐”๐ฌ๐ข๐ง๐  ๐Œ๐š๐œ๐ก๐ข๐ง๐ž ๐‹๐ž๐š๐ซ๐ง๐ข๐ง๐  ๐ฐ๐ข๐ญ๐ก ๐๐ฒ๐ญ๐ก๐จ๐ง.

The sessions are designed to help participants work confidently with real gene expression data, guiding them from data preparation to model evaluation and biological interpretation.

๐Ÿ“Œ ๐–๐ก๐š๐ญ ๐˜๐จ๐ฎโ€™๐ฅ๐ฅ ๐‹๐ž๐š๐ซ๐ง
- Fundamentals of biomarkers and supervised machine learning
- Working with gene expression datasets in Python - Fundamentals of biomarkers and supervised machine learning
- Building and evaluating ML models for biomarker discovery
- Interpreting model outputs to identify biologically relevant biomarkers

๐–๐ก๐จ ๐’๐ก๐จ๐ฎ๐ฅ๐ ๐€๐ญ๐ญ๐ž๐ง๐: Life science students, bioinformatics and data science learners, and researchers interested in applying machine learning to omics and clinical data.

๐˜—๐˜บ๐˜ต๐˜ฉ๐˜ฐ๐˜ฏ ๐˜ง๐˜ข๐˜ฎ๐˜ช๐˜ญ๐˜ช๐˜ข๐˜ณ๐˜ช๐˜ต๐˜บ ๐˜ช๐˜ด ๐˜ฉ๐˜ฆ๐˜ญ๐˜ฑ๐˜ง๐˜ถ๐˜ญ ๐˜ฃ๐˜ถ๐˜ต ๐˜ฏ๐˜ฐ๐˜ต ๐˜ฎ๐˜ข๐˜ฏ๐˜ฅ๐˜ข๐˜ต๐˜ฐ๐˜ณ๐˜บ. ๐˜›๐˜ฉ๐˜ช๐˜ด ๐˜ธ๐˜ฐ๐˜ณ๐˜ฌ๐˜ด๐˜ฉ๐˜ฐ๐˜ฑ ๐˜ช๐˜ด ๐˜ด๐˜ถ๐˜ช๐˜ต๐˜ข๐˜ฃ๐˜ญ๐˜ฆ ๐˜ง๐˜ฐ๐˜ณ ๐˜ฃ๐˜ฆ๐˜จ๐˜ช๐˜ฏ๐˜ฏ๐˜ฆ๐˜ณ๐˜ด ๐˜ข๐˜ฏ๐˜ฅ ๐˜ญ๐˜ช๐˜ง๐˜ฆ ๐˜ด๐˜ค๐˜ช๐˜ฆ๐˜ฏ๐˜ค๐˜ฆ ๐˜ณ๐˜ฆ๐˜ด๐˜ฆ๐˜ข๐˜ณ๐˜ค๐˜ฉ๐˜ฆ๐˜ณ๐˜ด.

๐Ÿ”—๐‘ญ๐’๐’“ ๐’˜๐’๐’“๐’Œ๐’”๐’‰๐’๐’‘ ๐’…๐’†๐’•๐’‚๐’Š๐’๐’” ๐’‚๐’๐’… ๐’“๐’†๐’ˆ๐’Š๐’”๐’•๐’“๐’‚๐’•๐’Š๐’๐’: https://forms.gle/m7gh1sik7WF84Tbb9

๐Ÿ“… Dates: November 4 - November 6, 2026
๐Ÿ•’ Time: 7:30 PM IST | 8:00 AM CST
๐ŸŒŽ Location: Online

๐Ÿ”„ Share this post with colleagues who may be interested in biomarker discovery and machine learning applications in biology.

๐Ÿš€ ๐‘๐ž๐ ๐ข๐ฌ๐ญ๐ซ๐š๐ญ๐ข๐จ๐ง๐ฌ ๐๐จ๐ฐ ๐Ž๐ฉ๐ž๐ง | โœจ ๐Ÿ‘-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐๐ซ๐จ๐ญ๐ž๐ข๐งโ€“๐‹๐ข๐ ๐š๐ง๐ ๐๐ข๐ง๐๐ข๐ง๐  ๐€๐Ÿ๐Ÿ๐ข๐ง๐ข๐ญ๐ฒ ๐๐ซ๐ž๐๐ข๐œ๐ญ๐ข๐จ๐ง ๐ฐ๐ข๐ญ๐ก ๐ƒ๐ž๐ž๐ฉ ๐‹๐ž๐š๐ซ๐ง๐ข...
10/11/2026

๐Ÿš€ ๐‘๐ž๐ ๐ข๐ฌ๐ญ๐ซ๐š๐ญ๐ข๐จ๐ง๐ฌ ๐๐จ๐ฐ ๐Ž๐ฉ๐ž๐ง | โœจ ๐Ÿ‘-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐๐ซ๐จ๐ญ๐ž๐ข๐งโ€“๐‹๐ข๐ ๐š๐ง๐ ๐๐ข๐ง๐๐ข๐ง๐  ๐€๐Ÿ๐Ÿ๐ข๐ง๐ข๐ญ๐ฒ ๐๐ซ๐ž๐๐ข๐œ๐ญ๐ข๐จ๐ง ๐ฐ๐ข๐ญ๐ก ๐ƒ๐ž๐ž๐ฉ ๐‹๐ž๐š๐ซ๐ง๐ข๐ง๐ 

Deep learning is transforming drug discovery โ€” but can you trust its binding affinity predictions? This mentor-guided workshop takes you through rigorous, code-driven labs using real bioactivity data from ChEMBL and BindingDB, so you learn to build models that hold up, and spot the ones that don't.

๐–๐ก๐š๐ญ ๐ฒ๐จ๐ฎ'๐ฅ๐ฅ ๐ฐ๐จ๐ซ๐ค ๐จ๐ง:
๐Ÿงช Molecular representations with RDKit: SMILES, fingerprints, molecular graphs, and 3D structures
๐Ÿ•ธ๏ธ Graph neural networks and DeepDTA-style architectures for proteinโ€“ligand interactions
๐Ÿ”ฌ Run Boltz-2 for joint structureโ€“affinity prediction on a real target, using a provided GPU server
๐Ÿง  Audit published benchmarks for data leakage and learn why they often fail in practice
๐Ÿ“Š Analyze a full virtual screening campaign โ€” ranking, enrichment, and comparison against baseline

๐Ÿ”— ๐‘๐ž๐ ๐ข๐ฌ๐ญ๐ž๐ซ ๐ก๐ž๐ซ๐ž: https://forms.gle/YRxF2cdbYbv931Mz6

๐ŸŽฏ ๐ˆ๐๐ž๐š๐ฅ ๐Ÿ๐จ๐ซ Master's and PhD students, postdocs and industry scientists

๐Ÿ“… November 3, 6 & 9, 2026; 7:30 PM IST | 8:00 AM CST
๐Ÿฆ Early bird registrations open till October 10, 2026!

๐Ÿงฌ Modern life sciences increasingly ask scientists to work across the bench, the code and the data. Our upcoming worksho...
10/11/2026

๐Ÿงฌ Modern life sciences increasingly ask scientists to work across the bench, the code and the data.

Our upcoming workshops are designed to help you build those connected skills, from managing and sharing code on GitHub to analyzing ChIP-seq data, interpreting cancer genomics resources, and evaluating machine learning models responsibly. Choose the training that fits your goals and skill level.

Seats are limited. Check out the newsletter for workshop details and registration links ๐Ÿ‘‡

https://www.linkedin.com/pulse/upcoming-hands-on-training-github-cancer-genomics-epigenomics-unnvc

๐Ÿ“ข ๐‰๐จ๐ข๐ง ๐Ž๐ฎ๐ซ ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐Ÿ’-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง, ๐Ž๐ง๐ฅ๐ข๐ง๐ž - ๐„๐ฉ๐ข๐ ๐ž๐ง๐จ๐ฆ๐ข๐œ๐ฌ โ€“ ๐‚๐ก๐ˆ๐-๐’๐ž๐ช ๐ƒ๐š๐ญ๐š ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌHave ChIP-seq data (or want to work wi...
10/11/2026

๐Ÿ“ข ๐‰๐จ๐ข๐ง ๐Ž๐ฎ๐ซ ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐Ÿ’-๐ƒ๐š๐ฒ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง, ๐Ž๐ง๐ฅ๐ข๐ง๐ž - ๐„๐ฉ๐ข๐ ๐ž๐ง๐จ๐ฆ๐ข๐œ๐ฌ โ€“ ๐‚๐ก๐ˆ๐-๐’๐ž๐ช ๐ƒ๐š๐ญ๐š ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ

Have ChIP-seq data (or want to work with it) but aren't sure how to get from raw reads to a biological story? In 4 days, you'll run the full pipeline yourself on a real Huntington's Disease dataset ๐Ÿง ๐Ÿงฌ, comparing H3K4me3 promoter marks between HD patients and healthy controls to see how chromatin changes relate to gene dysregulation.

๐๐ฒ ๐ญ๐ก๐ž ๐ž๐ง๐, ๐ฒ๐จ๐ฎ'๐ฅ๐ฅ ๐›๐ž ๐š๐›๐ฅ๐ž ๐ญ๐จ:
โœ… Download public ChIP-seq data from GEO/SRA and quality-check it yourself
โœ… Trim, align, and filter reads, and spot problem samples before they mislead you
โœ… Call peaks with MACS3 and find differentially bound regions with DiffBind + DESeq2
โœ… Link those regions to genes, pathways (GO/KEGG), and regulatory motifs
โœ… Make publication-ready heatmaps, TSS profiles, and IGV views, and explain what they mean

๐–๐ก๐š๐ญ ๐ฒ๐จ๐ฎ ๐ ๐ž๐ญ:
๐ŸŽ“ Live, mentor-guided sessions, with recordings for 30 days
๐Ÿ’ป Ready-to-run Colab notebooks, scripts, and datasets you can reuse for your own projects
๐Ÿ›Ÿ 30 days of technical and bioinformatics support after the workshop
๐Ÿ“š Bonus self-paced courses: Intro to Bioinformatics, Epigenomics, Bioinformatics in R, and Linux for Omics
๐Ÿ“œ Workshop and course certificates

๐Ÿ‘ฅ ๐ˆ๐๐ž๐š๐ฅ ๐Ÿ๐จ๐ซ: MS/PhD students, postdocs, wet-lab scientists who want to analyze their own ChIP-seq data, and pharma/biotech R&D teams. Suitable for beginner to intermediate levels.

๐Ÿ“… October 26โ€“29, 2026
๐Ÿ•’ 7:00 PM IST | 8:30 AM CDT
๐ŸŒŽ Online

๐Ÿ”— Register here: https://forms.gle/rjjZPidmY37x7Fx8A

๐Ÿšจ Workshop Alert | ๐Ÿงฌ ๐Ÿ-๐–๐ž๐ž๐ค๐ž๐ง๐ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐€๐ฉ๐ฉ๐ฅ๐ข๐ž๐ ๐‚๐จ๐ฆ๐ฉ๐ฎ๐ญ๐š๐ญ๐ข๐จ๐ง๐š๐ฅ ๐๐š๐ญ๐ก๐จ๐ฅ๐จ๐ ๐ฒ: ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐ˆ๐ฆ๐š๐ ๐ž ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ, ๐๐ข๐จ๐ฆ๐š...
10/11/2026

๐Ÿšจ Workshop Alert | ๐Ÿงฌ ๐Ÿ-๐–๐ž๐ž๐ค๐ž๐ง๐ ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐–๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ: ๐€๐ฉ๐ฉ๐ฅ๐ข๐ž๐ ๐‚๐จ๐ฆ๐ฉ๐ฎ๐ญ๐š๐ญ๐ข๐จ๐ง๐š๐ฅ ๐๐š๐ญ๐ก๐จ๐ฅ๐จ๐ ๐ฒ: ๐‡๐š๐ง๐๐ฌ-๐Ž๐ง ๐ˆ๐ฆ๐š๐ ๐ž ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ, ๐๐ข๐จ๐ฆ๐š๐ซ๐ค๐ž๐ซ ๐’๐œ๐จ๐ซ๐ข๐ง๐  & ๐Œ๐‹

OmicsLogic and MedAIQ bring you a practical, research-ready workshop designed to help participants transform H&E, IHC, and IF whole slide images (WSI) into quantitative, reproducible insights using Python-based digital pathology workflows in Google Colab.

Over three live sessions across two weekends, participants work through the complete image analysis pipeline: WSI handling and slide QC, stain separation and normalization, segmentation, deep-learning cell detection with Cellpose, biomarker scoring (Ki-67, ER/PR, H-score), and machine learning for tissue classification and spatial analysis.

Between the weekends, you apply what you've learned to a guided mini-project, then present it at a Project Clinic for expert feedback from the mentor. You leave with a portfolio-ready project and a clear path to grow it into publishable research.

๐Ÿ”— ๐‘๐ž๐ ๐ข๐ฌ๐ญ๐ž๐ซ ๐ก๐ž๐ซ๐ž: https://forms.gle/3qfa5XhLnKUFHy4LA
๐Ÿ“… Dates: Dec 12โ€“13 & Dec 19, 2026
โฐ Time: 7:30 PM IST | 8:00 AM CST
๐Ÿ“ Location: Online
๐Ÿฆ Early bird discounts until November 21, 2026

๐Ÿ”„ Share this with your friends, colleagues, and peers who may be interested in computational pathology and AI-ready digital slide analysis.

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