KAUST Core Labs

01/10/2024

KAUST Bioscience Core Lab (BCL), PacBio and Alliance Global (AGBL) would like to invite you to join them at King Abdullah University Of Science And Technology - KAUST on October 9th for the KAUST PacBio Day.

Attendees will gain insights into groundbreaking tools and techniques through engaging presentations. Expert speakers from KAUST and PacBio will share their experience using PacBio’s innovative technology and its impact on research projects. With the latest Revio system and supported applications, highly accurate long-read sequencing (HiFi sequencing) is ready to scale to support large studies and develop new areas of research.

Highlights of the event include:
· In-person presentations from scientists using HiFi reads for whole genome, metagenomic, and single-cell sequencing in topics including plant science/agriculture, human genomics and rare diseases, brain development, and marine science.
· Overview of the capabilities of the Revio system, PacBio applications and the facilities at the KAUST Bioscience Core Laboratory.
· Q&A and networking opportunities with speakers and sequencing experts

Sign up today and be ready to discover how PacBio long read sequencing truly unleashes the future of research. To secure your spot, please register here: https://forms.gle/fjdDRTxD5xGoUvfc6. You will receive a confirmation email once selected. Registration is free but spots are limited.

For any questions, please contact [email protected]

The of Education

15/09/2024

Recap of an incredible week at the 12th Saudi HPC/AI Conference!

Last week, we witnessed a remarkable turnout from the KAUST Core Labs at the Saudi HPC/AI 2024, hosted by King Khalid University ,College of Computer Science.

A huge thank you to Lee Jysoo for delivering an insightful keynote address!

Our talented scientists engaged attendees with dynamic workshops and captivating talks:
Nagarajan Kathiresan
Saber Feki
Mohsin Ahmed Shaikh
Didier Barradas-Bautista
Abdelghafour HALIMI
Yong Zhou

Special recognition goes to Saber Feki for his outstanding contributions to the organization of this event and for serving as a mentor and judge during the hackathon.

Together, we continue to advance the fields of and !

The of Education

11/09/2024

The KAUST Visualization Core Lab presents:
Introduction to Data Science Workshop Series

September 26, 29, & October 3, 2024
9:00 a.m. - 1:00 p.m.
B1, L2, Multi-Purpose Room

With the increased demand for data science solutions at KAUST (King Abdullah University of Science and Technology) and across Saudi Arabia, the KAUST Visualization Core Lab (KVL) is organizing the hands-on Introduction to Data Science workshop series. This series teaches graduate students, scientists, faculty members, and industry practitioners from KAUST and Saudi Arabia core data science tools and methods so that they may begin building their own data science applications. It also fulfills many prerequisites for various workshops we offer later in the year.

The KVL team has been offering the Introduction to Data Science workshop series since 2018. The series is very popular and has trained hundreds of individuals from KAUST and throughout Saudi Arabia.

Introduction to Shell for (Data) Scientists
September 26, 9:00-1:00 p.m. AST B1, L2, Multi-Purpose Room
Register here: https://kaustforms.formstack.com/forms/shell_24

Introduction to Conda for (Data) Scientists
September 29, 9:00-1:00 p.m. AST B1, L2, Multi-Purpose Room
Register here: https://kaustforms.formstack.com/forms/conda_24

Introduction to Python for Data Science
October 3rd, 9:00-1:00 p.m. AST B1, L2, Multi-Purpose Room
Register here: https://kaustforms.formstack.com/forms/python_24

(Please register separately for each workshop you are interested in. Due to limited registration slots, we encourage you to register early.)

For any questions, please contact [email protected].

08/09/2024

The KAUST Visualization Core Lab presents:
Scientific Visualization Workshop Series

September 17 – October 8, 2024
1:30 PM - 3:30 PM
Bldg. 1, Level 2, Room 2418 (Multi-Purpose Room, Desert Side)


The KAUST Visualization Core Lab (KVL) is pleased to announce a workshop series on scientific visualization. The workshop series will cover various visualization tools, workflows, and techniques related to large data visualization and Image segmentation.

The series is comprised of these workshops:

VisIT ~ An Introductory Hands-On Workshop
Register here: https://kaustforms.formstack.com/forms/visit2024
Tuesday, September 17, 2024
1:30 – 3:30 p.m.

Introduction to Paraview
Register here: https://kaustforms.formstack.com/forms/paraviewfall2024
Tuesday, October 1, 2024
1:30 – 3:30 p.m.

Image Segmentation and 3D Analysis
Register here: https://kaustforms.formstack.com/forms/segmentation2024
Tuesday, October 8, 2024
1:30 – 3:30 p.m.


(Please register separately for each workshop that you are interested in. Register early to book your spot, as slots are limited.)

The workshop series is tailored for the KAUST and In-Kingdom research community – especially students, scientists, and postdocs, who work with complex data in their research and can benefit from creating interactive and exploratory visualizations to gain a better understanding of their data. The goal of this series is to train scientists with tools and techniques that can help them find insights into the scientific phenomenon behind the data.

This series will introduce powerful tools such as VisIT, ParaView, and Avizo. Our scientists will present various interactive demos, workflows, and examples to educate our participants about these tools.

For further information, visit the KVL Training Page: https://wiki.vis.kaust.edu.sa/training/overview

For any questions, please contact [email protected].

28/05/2024

As we concluded the King Abdullah University Of Science And Technology - KAUST Employee Service Awards Ceremony today, we'd like to again warmly congratulate our dedicated Core Labs staff for their 5, 10 and 15 years of service! We are lucky to have you all!

The of Commitment

21/05/2024

That time of year has come again! Next week we gather to celebrate and acknowledge the remarkable milestones achieved by the dedicated individuals at KAUST. It is with great joy and admiration that we applaud nearly 300 outstanding employees who have reached 5, 10, and 15 years of service.

Among these individuals, we want to give a special acknowledgment to 29 Core Lab employees, who have played a crucial role in KAUST's growth and success.
As we reflect on their achievements, we eagerly anticipate the future accomplishments that lie ahead.
Together, let's honor …
The of Commitment.

13/05/2024

We're happy to highlight Trevor Waldmeyer and Nikolaos Papagiannis, our exceptional Core Labs staff members, for their insightful presentations on "Prototyping in a Research Environment" at Space Camp 2102!

Space Camp 2102, hosted by KAUST’s Strategic National Advancement, is a highly-acclaimed program in collaboration with Communications, Space & Technology Commission (CST) , وكالة الفضاء السعودية | Saudi Space Agency & Starlight Education Group. Over 150 gifted students aged 13-15 from across Saudi Arabia came together for a transformative educational adventure in science, technology, engineering, and mathematics (STEM). Students got the chance to meet with Saudi Space Agency (SSA) astronaut Mariam H. Fardous, NASA astronauts Kathryn Thornton and Charles Gemar, and European analog astronaut Charlotte Pouwels. The camp ended with the Space 2102 Challenge where students designed and tested their own CubeSat missions.

The Core Labs presentation was closely linked to designing CubeSats. This connection helped the students understand the practical application of prototyping in space-related projects. Our experts shared insights into design thinking principles, emphasizing the importance of identifying genuine needs and ensuring the viability and feasibility of ideas. They also provided a concrete example project that exemplified these principles and discussed the challenges encountered and the design process followed to develop a proposed solution.

We're proud to have such talented and dedicated individuals on our team, constantly striving to inspire and educate the next generation of scientists and engineers.

The of Education

08/05/2024

The KAUST Imaging & Characterization Core Lab presents:

Explore Zeiss Imaging Technologies

Wednesday, May 15, 2024
10:00 AM – 4:30 PM
Bldg. 3 – Level 5 – 5209

The KAUST Imaging and Characterization Core Lab, Optical Microscopy (OM) Unit, in collaboration with Attieh Medico and Carl Zeiss AG, is delighted to invite you to a day of enlightening lectures introducing two cutting-edge imaging modalities recently installed in our Core Labs. We are proud to present application scientists from Zeiss who will discuss the remarkable capabilities of super-resolution microscopy and whole slide scanning microscopy.

Super-resolution microscopy, powered by the Zeiss Elyra 7, employs structured illumination and single-molecule localization techniques to achieve an astounding resolution of 60 nm. Through this technology, biologists gain unprecedented access to the intricate molecular details of cells, enabling the observation of live cell dynamics at remarkable speeds.

The Axioscan 7, our whole slide scanning microscope, revolutionizes image acquisition by automating the process for a diverse range of samples within the life sciences sector. Whether it's tissue sections prepared with traditional histological stains or fluorescent probes, the Axioscan 7 effortlessly captures and digitizes entire slides, offering researchers a comprehensive view of their samples. Moreover, this powerful instrument extends its utility to material science research, as it enables imaging of thin rock sections using plane-polarized, cross-polarized, or circularly polarized light.

This event is open to anyone interested in gaining valuable insights into the latest advancements in imaging technologies and their applications in various scientific disciplines.

To view the full agenda, click here: https://corelabs.kaust.edu.sa/docs/default-source/training-documents/zeiss-agenda.pdf?sfvrsn=46bf180e_2

Register here by Monday, May 13, 2024: https://docs.google.com/forms/d/e/1FAIpQLSf-JykDszEU6QoGuVcZK9Twu6_jEfoUAxZcltnSkzjhcRaUqg/viewform

The of Technology

15/04/2024

يعلن مختبر التصوير العلمي في جامعة الملك عبد الله للعلوم والتقنية (كاوست) عن تنظيمه:

سلسلة ورشة عمل أدوات وتقنيات الذكاء الاصطناعي التطبيقية باللغة العربية

الخميس 18 إبريل
2:00 ظهرًا إلى 4:00 مساءً
المكان: قناة مختبر التصوير العلمي على منصة يوتيوب (بث مباشر)

نعيش اليوم في ظل تطور تقنية الذكاء الاصطناعي التي أصبحت الدافع وراء الثورة الصناعية الجديدة، وبات تأثيرها ملموسًا على جميع جوانب حياتنا اليومية. ومع زيادة هذا التأثير بشكل واضح مؤخرًا، زاد الطلب على تنظيم ورش عمل شاملة حول الذكاء الاصطناعي. واستجابة لذلك، يعلن مختبر التصوير العلمي في كاوست عن تنظيمه لسلسلة ورش العمل حول أدوات وتقنيات الذكاء الاصطناعي المختلفة. ستساعد هذه الورش طلبة الدراسات العليا والعلماء وأعضاء هيئة التدريس وممارسي الصناعة من كاوست ومختلف أنحاء المملكة العربية السعودية على تطوير معرفتهم وقدراتهم في استخدام أدوات الذكاء الاصطناعي الأساسية ومفاهيمه وخوارزمياته وتقنياته وتطبيقاته المختلفة. وتعد هذه السلسلة مثالية لأولئك الذين يتطلعون إلى استكشاف ما يمكن أن تقدمه تقنية الذكاء الاصطناعي، وللمهنيين الذين يسعون إلى تحسين معرفتهم في هذا المجال سريع التطور.

ستكون سلسلة ورش العمل هذه الأولى من نوعها على الإطلاق والتي تُقَدَّم باللغة العربية. وسيكون الدكتور عبد الغفور حليمي Abdelghafour HALIMI, Ph.D، الذي يتمتع بخبرة ميدانية طويلة في مجالات الذكاء الاصطناعي، المتحدث الرئيسي فيها.

الجمهور المستهدف:

· الطلبة أو الممارسون الذين يرغبون في تعلم الذكاء الاصطناعي، وليس لديهم خبرة كافية، أو لا يزالون مبتدئين في هذا المجال.

· أي مبرمج يرغب في تطوير مهاراته في علوم البيانات والذكاء الاصطناعي.

· أي شخص يرغب في تعلم هذه الموضوعات مباشرة من خبراء في هذا المجال لا يكتفون بالتدريس فقط، بل عملوا بالفعل في هذا المجال.

مقدمة في التعلّم العميق
الخميس 18 أبريل 2024
2:00 مساءً - 4:00 مساءً

رابط البث المباشر: https://www.youtube.com/watch?v=adNdUUMKiv8&ab_channel=KAUSTVisualizationCoreLab

سجل هنا: https://kaustforms.formstack.com/forms/a_i_workshop_series_introduction_deep_learning_2024_arabic_version

(يرجى التسجيل بشكل منفصل لكل ورشة عمل. بادر إلى التسجيل مبكرًا حيث إن المقاعد محدودة).

يمكنك الاشتراك في قناة مختبر التصوير العلمي في كاوست على اليوتيوب للحصول على إشعارات بجميع الدورات التدريبية والفعاليات الخاصة بنا.

لأي استفسارات، يرجى التواصل على البريد الإلكتروني: [email protected]

09/04/2024

26/03/2024

The KAUST Visualization Core Lab presents:
AI Tools & Techniques Workshop Series in Arabic

This workshop series, led by Dr. Abdelghafour HALIMI, Ph.D, will be the first of its kind to be delivered in the Arabic language. Dr. Halimi brings with him multiple years of field experience working in the areas of AI, making him a very knowledgeable and experienced speaker for this event.

In an era where Artificial Intelligence (AI) is ubiquitous and revolutionizing industries and daily life, the thirst for comprehensive AI workshops is rising. Addressing this growing demand, the KAUST Visualization Core Lab (KVL) is thrilled to unveil a workshop series on different AI tools and techniques. This workshop series will help graduate students, scientists, faculty members, and industry practitioners from KAUST and across Saudi Arabia to build their capacity in core AI tools, concepts, algorithms, techniques, and applications. The workshop series is ideal for those looking to embark on a journey into AI and for professionals seeking to enhance their knowledge in this rapidly evolving domain.

Who can attend?
- Any student or practitioner who wants to learn AI and has zero/minimal experience of it.
- Any programmer who wants to extend their skills into Data Science and AI to make themselves more valuable.
- Anyone who wants to learn these topics from industry experts with multiple years of field experience.

The workshops in the series are:

Introduction to Machine Learning (in Arabic)
Sunday, April 14, 2024
2:00 PM.- 4:00 PM (KSA time)
Workshop Link: https://a-halimi.github.io/ml-arabic-workshop/
Register here: https://kaustforms.formstack.com/forms/a_i_workshop_series_introduction_machine_learning_2024_arabic_version
Live Streaming Link: https://www.youtube.com/watch?v=EPaoxKbztsI

Introduction to Deep Learning (in Arabic)
Thursday, April 18, 2024
2:00 PM.- 4:00 PM (KSA time)
Workshop Link: https://a-halimi.github.io/dl-arabic-workshop/
Register here: https://kaustforms.formstack.com/forms/a_i_workshop_series_introduction_deep_learning_2024_arabic_version
Live Streaming Link: https://www.youtube.com/watch?v=adNdUUMKiv8&ab_channel=KAUSTVisualizationCoreLab

(Please register separately for each workshop you are interested in. Slots are limited, so we advise you to register early to book your spot.)

For any questions, please contact [email protected]

The of Training

21/03/2024

To end the week on a fun and uplifting note, we’d like to share the incredible success of our Grade 5 students at the TKS Soapbox Derby earlier this week. This exciting event was hosted by The KAUST School in collaboration with multiple departments at KAUST Official. Our Prototyping and Product Development Core Lab had the honor of sponsoring one of the teams, providing the tools, mentorship and guidance they needed to get on track!

As part of the program at the school, these talented young minds put their creativity and engineering skills to the test, designing and building their own soapbox cars. The TKS Soapbox Derby not only showcased their talents but also fostered their love for science, technology, engineering, and mathematics.

Congratulations to all the teams!

- Team Aquila: sponsored by the Prototyping & Product Development KAUST Core Labse Labs
- Team Pegasus: sponsored by the Clean Combustion Research Center, KAUST stion Research Center (CCRC) at KAUST
- Team Orion: sponsored by KAUST Security
- Team Hydra: sponsored by KAUST Reefscape Restoration Initiative

Special thanks to the KAUST Enrichment for Youth (KEY) Office for making this possible and to the TKS faculty and staff, and all the university sponsors and volunteers.

The of Collaboration