Laboratorio de Biologia Computacional

Our manuscript of Bacterial Promoters has just been published!! Thank you to our collaborators and congrats!.

CDBProm: the Comprehensive Directory of Bacterial Promoters Abstract. The decreasing cost of whole genome sequencing has produced high volumes of genomic information that require annotation. The experimental identificati

Trabajo en colaboracion con G. Martinez (Canada) y De Avila (Brasil)... promotores en Arqueas.

Explainable artificial intelligence as a reliable annotator of archaeal promoter regions - Scientific Reports Archaea are a vast and unexplored cellular domain that thrive in a high diversity of environments, having central roles in processes mediating global carbon and nutrient fluxes. For these organisms to balance their metabolism, the appropriate regulation of their gene expression is essential. A key m...

Trabajo en colaboracion con E. Galan (Mexico), D. Garrido (Chile), ya en linea

Structure of co-expression networks of Bifidobacterium species in response to human milk oligosaccharides Biological systems respond to environmental perturbations and a large diversity of compounds through gene interactions, and these genetic factors comprise complex networks. Experimental information from transcriptomic studies has allowed the identification of gene networks that contribute to our und...

Manuscrito "on line", en colaboracion con M. Fabiana, et al.

The gene regulatory network of Staphylococcus aureus ST239-SCCmecIII strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds IntroductionStaphylococcus aureus is one of the most prevalent and relevant pathogens responsible for a wide spectrum of hospital-associated or community-acquired infections. In addition, methicillin-resistant Staphylococcus aureus may display multidrug resistance profiles that complicate treatment....

Editado con Alla Lapidus (Saint Petersburg State University).

Rising Stars in Evolutionary and Genomic Microbiology: 2022 Recognizing the future leaders of Evolutionary and Genomic Microbiology is fundamental to safeguarding tomorrow's driving force in innovation.This collection will showcase the high-quality work of internationally recognized researchers in the early stages of their careers. We aim to highlight resear...

https://www.frontiersin.org/articles/10.3389/fmicb.2022.1048694/full?utm_source=F-NTF&utm_medium=EMLX&utm_campaign=PRD_FEOPS_20170000_ARTICLE

Construction and analysis of gene co-expression network in the pathogenic fungus Ustilago maydis IntroductionBiological systems respond to environmental disturbances and a wide range of compounds through complex gene interaction networks. The enormous growth of experimental information obtained using large-scale genomic techniques such as microarrays and RNA sequencing led to the construction o...

Trabajo en colaboracion con Ledesma y Hernandez.

Prediction of DNA-Binding Transcription Factors in Bacteria and Archaea Genomes DNA-binding transcription factors (TFs) play a central role in the gene expression of all organisms, from viruses to humans, including bacteria and archaea. The role of these proteins is the fate of gene expression in the context of environmental challenges. Because...

Colaboracion con E. Galan y C. Gomez-Garcia

A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp Entamoeba are amoeboid extracellular parasites that represent an important group of organisms for which the regulatory networks must be examined to better understand how genes and functional processes are interrelated. In this work, we inferred the gene regulatory networks (GRNs) in four Entamoeba s...

https://quiurevista.com/estudio-de-la-relacion-del-genoma-y-su-metabolismo-para-entender-los-procesos-de-infeccion-y-produccion-de-metabolitos-de-xanthomonas-spp/

Estudio de la relación del genoma y su metabolismo para entender los procesos de infección y producción de metabolitos de Xanthomonas spp ⋆ Quiu Estudio de la relación del genoma y su metabolismo para entender los procesos de infección y producción de metabolitos de Xanthomonas spp Posted by Quiu Revista | Jul 26, 2022 | Detrás del paper | 0 | Xantomonas es un género de bacterias gram-negativa perteneciente a las gammaproteobacterias, q...

https://regulatorynetworks.unam.mx/

Sitio de redes regulatorias asociado al articulo:

https://www.frontiersin.org/articles/10.3389/fmicb.2022.923105/full

Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes Gene regulation is a key process for all microorganisms, as it allows them to adapt to different environmental stimuli. However, despite the relevance of gene expression control, for only a handful of organisms is there related information about genome regulation. In this work, we inferred the gene....

El Tecnológico Nacional de México (TecNM) a través de sus Campus Tizimín y Mérida, y la Delegación Sur Sureste de la Sociedad Mexicana de Biotecnología y Bioingeniería, en el marco de la conmemoración de los doscientos años del natalicio del científico francés Louis Pasteur, tienen el agrado de convocar a estudiantes de programas de Licenciatura y Posgrado afines a la Biología, Química, Bioquímica y Ciencias de los Alimentos de todos los estados de la República Mexicana a participar en el Concurso para elegir a los autores del libro digital: Louis Pasteur, 200 años de inmortalidad

https://libropasteur.ittizimin.edu.mx
E-mail: [email protected]

Manuscrito en colaboracion con Sganzerla-Martinez, et al.

Machine learning and statistics shape a novel path in archaeal promoter annotation - BMC Bioinformatics Background Archaea are a vast and unexplored domain. Bioinformatic techniques might enlighten the path to a higher quality genome annotation in varied organisms. Promoter sequences of archaea have the action of a plethora of proteins upon it. The conservation found in a structural level of the bindi...