The Red-Green Research Centre

The Red-Green Research Centre

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All young researchers, collaborators, and principal investigators voluntarily work at the centre.

The goal of the Red-Green Research Centre is to promote research culture in Bangladesh and to train students for cutting-edge research in computational chemistry, computational biology, and bioinformatics. The Red-Green Research Centre conducts research with the aim of discovering and understanding the chemical and biological phenomena in atomic level investigated by computational approach. Most o

06/05/2026

"All seats are taken! Registration for our program is now closed."
Program Schedule: May 7-10, 2026 from 8:00 pm to 11:30 pm.
Congratulations to all who successfully enrolled in this program.

05/05/2026

๐Ÿšจ Only 1 day left!
Apply ASAP and secure your seat!

๐Ÿ”Š๐Ÿ“ฃ๐Ÿ”ŠAttention everyone๐Ÿ”Š๐Ÿ“ฃ๐Ÿ”Š
After receiving an overwhelming response to our waiver for our upcoming course on Quantum Calculation, Advanced Molecular Dynamics Simulation, and Mass Spectrometry, We are pleased to announce a revised fee structure in consideration of the current economic situation, the registration fee has been reduced to 6,500 BDT for students and 8,000 BDT for professionals. Additionally, please be advised that the training schedule has been updated. The course will now take place from May 7-10, 2026.

Please note that this special pricing is applicable only for this specific session.

Details available in the registration form linked below:
https://forms.gle/WHYFGFo5trYWpGFb8

01/05/2026

๐Ÿšจ Only 5 Days Left!

Registration is closing soon for our Quantum Calculation, Molecular Dynamics & Mass Spectrometry Training (May 2026)

๐Ÿ“… Deadline: 06 May 2026
๐Ÿ“ Online Training + Hands-on (Dhaka & Chittagong)

Seats are limited and filling fast - donโ€™t miss this chance to gain both theoretical knowledge + computational research experience ๐Ÿงช

๐Ÿ‘‰ Register now: https://forms.gle/WHYFGFo5trYWpGFb8

๐Ÿ“ž Contact: 01830795554

18/04/2026

๐Ÿ”Š๐Ÿ“ฃ๐Ÿ”ŠAttention everyone๐Ÿ”Š๐Ÿ“ฃ๐Ÿ”Š
After receiving an overwhelming response to our waiver for our upcoming course on Quantum Calculation, Advanced Molecular Dynamics Simulation, and Mass Spectrometry, We are pleased to announce a revised fee structure in consideration of the current economic situation, the registration fee has been reduced to 6,500 BDT for students and 8,000 BDT for professionals. Additionally, please be advised that the training schedule has been updated. The course will now take place from May 7-10, 2026.

Please note that this special pricing is applicable only for this specific session.

Details available in the registration form linked below:
https://forms.gle/WHYFGFo5trYWpGFb8

14/04/2026

Molecular Dynamics (MD) is essential for visualizing the real-time behavior of proteins and widely used in ligand designing. While it excels at showing how a ligand fits into a binding pocket, classical molecular dynamics (CMD) is often limited by the timescale problem. Strong ligand can bind to the active site for longer time that is rarely possible to visualize by CMD. Steered Molecular Dynamics (SMD) accelerates the dissociation process by applying an external force. This helps us to visualize the dissociation within a much shorter timescale.

How does Steered Molecular Dynamics (SMD) work?

A harmonic spring is attached to the ligand, and a time-dependent pulling potential is applied to gradually separate the ligand from the protein. During this process, the applied force is continuously monitored. A higher rupture force indicates stronger ligand-protein interactions and suggests that the ligand is more active, whereas a lower rupture force implies weaker interactions and reduced activity.

What more can Steered Molecular Dynamics do?

It can also be used to identify ligand unbinding pathways, estimating binding strength, generate initial configurations for Umbrella Sampling, investigating membrane permeability and conformational changes.

To gain a deeper understanding of Molecular Dynamics (MD) and Steered Molecular Dynamics (SMD), join our ongoing training on Quantum Mechanics (QM), Molecular Dynamics (MD) Simulation, and Mass Spectrometry (MS).

Register via the link below:
https://forms.gle/WHYFGFo5trYWpGFb8

11/04/2026

Protein structures are inherently dynamic, undergoing continuous foldingโ€“unfolding transitions that govern their function. Capturing these structural changes, however, requires a combination of computational and experimental approaches.

Molecular Dynamics (MD) simulations provide atomistic insight into conformational evolution, enabling us to track unfolding pathways and structural fluctuations over time. In parallel, Mass Spectrometry (MS), particularly electrospray-based techniques (ESI), probes these conformations in the gas phase through charge state distributions and fragmentation patterns, offering indirect yet powerful structural evidence.

In this video, we performed an MD simulation of ubiquitin at a 13+ charge state, illustrating its unfolding behavior under highly charged conditions, consistent with gas-phase structural transitions observed in MS experiments.

Together, MD simulation and MS establish a complementary framework-linking dynamic simulations with experimental observables. To better understand protein folding and unfolding mechanisms at the molecular level register to our upcoming training on Quantum Calculation, Advanced Molecular Dynamics Simulation & Mass Spectrometry (Online + Hands-on)
๐Ÿ“… 23โ€“26 April 2026

๐Ÿ‘‰ To know more and enroll:
https://www.facebook.com/share/p/188VZsgaWT/?mibextid=wwXIfr

25/03/2026

๐Ÿšจ Registration is now open for our upcoming Quantum Calculation, Advanced Molecular Dynamics Simulation & Mass Spectrometry Training (Online Lectures + Hands-on Practice) ๐Ÿšจ

๐Ÿ“ Online + Hands-on (Dhaka & Chittagong)
๐Ÿ“… 23โ€“26 April 2026

Dear Students & Professionals, we are pleased to announce our upcoming comprehensive training program combining Computational Chemistry and Fundamentals of Mass Spectrometry. This program will provide both theoretical understanding and practical exposure to modern research techniques.

๐Ÿงช Training Overview
๐Ÿ“… Dates: 23โ€“26 April 2026
โฐ Time: 8:00 PM โ€“ 11:30 PM (Online via Zoom)
๐Ÿ“ Hands-on Session (3 Days): Chittagong Lab & Dhaka Lab

๐Ÿ“š What You Will Learn

๐Ÿ”น Computational Chemistry
โ€ข Molecular Mechanics (MM), Semi-empirical & Quantum Methods
โ€ข Geometry Optimization & Molecular Characterization
โ€ข Molecular Dynamics (MD) & Steered MD (SMD)
โ€ข Drugโ€“Protein & Peptideโ€“Protein Interaction Analysis
โ€ข Protein-Ligand/Protein-Peptide Simulation and Analysis
โ€ข Software: YASARA, DESMOND, Free Style

๐Ÿ”น Mass Spectrometry
โ€ข Instrumentation (Ion Source, Analyzer, Detector)
โ€ข Ionization Techniques (EI, ESI, APCI, MALDI, Ambient)
โ€ข Tandem MS & Fragmentation Methods
โ€ข Quadrupole, TOF, Orbitrap, Ion Trap
โ€ข Charge State Calculation & Peptide Fragmentation Nomenclature
โ€ข Data Analysis using Freestyle
โ€ข Sample Preparation (MALDI basics)

๐Ÿ“ Assessment
Demo project submission within 30 days after training

๐Ÿ‘จโ€๐Ÿ”ฌ Who Can Join
BS (Honors) 1stโ€“4th Year / MS Students, Young Professionals
Fields: Physics, Chemistry, Pharmacy, Biochemistry, Biotechnology, CSE, Microbiology, Genetics.
MBBS Students & Medical Doctors are encouraged

๐Ÿ’ฐ Training Fees
Students: 8000 BDT
Professionals: 10,000 BDT
(This is a non-profit initiative; fees are used for lab development and operational costs)

๐Ÿ’ณ Payment Details
Bkash/Nagad: +8801939366058 (send exact amount)

Bank Transfer:
A/C Name: MD Rakibul Hasan
A/C No: 2303728203001
Bank: City Bank Bangladesh PLC
Branch: Bhatiary Station, Sitakunda, Chittagong
Routing No: 225151226

๐Ÿ“ Registration
https://forms.gle/WHYFGFo5trYWpGFb8

๐Ÿ“ฉ Confirmation within 48โ€“72 hours after payment

โš ๏ธ Important Notes
โ€ข Seats are limited (first come, first served)
โ€ข Participation does not guarantee research position
โ€ข Schedule may change if necessary

โณ Deadline
22 April 2026 (or earlier if seats are filled)

๐Ÿ“ Locations
Chittagong: The Red-Green Research Centre, Dampara WASA
Dhaka: Karim-Nazma Tower, Farmgate

๐Ÿ“ž Contact
Joy โ€“ 01830795554
Belayet โ€“ 01750113396
Saif โ€“ 01745080069
Shoikot โ€“ 01939366058
Sabbir โ€“ 01881140014

๐Ÿ“ง Email: [email protected]

๐Ÿ“– Research Work

https://doi.org/10.1039/D4AN00645C
https://doi.org/10.1021/acs.analchem.1c05074
https://doi.org/10.1126/science.aat6457
https://doi.org/10.1002/rcm.8204
https://doi.org/10.1002/jcc.27050
https://www.sciencedirect.com/.../pii/S0010482521005539
https://pubs.acs.org/doi/10.1021/acs.jpcb.0c05621
https://doi.org/10.1021/acsomega.3c04570
http://springerplus.springeropen.com/.../s40064-016-2996-5

07/02/2026

We will start today...

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Location

Telephone

Address


Level-9, House-16, Karim-Nazma Tower, Bank Goli (Beside Al Raji Hospital), Tejkunipara, Farmgate
Dhaka
1219

Opening Hours

Monday 09:00 - 17:00
Tuesday 10:00 - 17:00
Wednesday 10:00 - 17:00
Thursday 10:00 - 17:00
Friday 09:00 - 17:00
Saturday 09:00 - 17:00
Sunday 09:00 - 17:00